PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013384-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 175aa    MW: 19846.1 Da    PI: 9.1617
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013384-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.3e-141482146
                     TSSS-HHHHHHHHHHHHHTTTT........................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg........................tWktIartmgkgRtlkqcksrwqk 46
                     +g+W+++Ed ll++ ++++G+g                         W+ Ia+ ++ gRt++++k++w++
  AHYPO_013384-RA 14 KGPWSAQEDALLLNFIARFGNGgnwislpkkadqilsmvdsprrkiMWAIIASNLP-GRTDNDVKNYWNT 82
                     79******************************************************.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-21593IPR009057Homeodomain-like
SuperFamilySSF466892.51E-11893IPR009057Homeodomain-like
PROSITE profilePS5129414.482988IPR017930Myb domain
SMARTSM007171.9E-131386IPR001005SANT/Myb domain
PfamPF002493.5E-121482IPR001005SANT/Myb domain
CDDcd001674.13E-81684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRSPCCDKT KVKKGPWSAQ EDALLLNFIA RFGNGGNWIS LPKKADQILS MVDSPRRKIM  60
WAIIASNLPG RTDNDVKNYW NTKLKRQISS GEFNIINNPI RNSCKKHNNN NNNNNNNNNN  120
NSQIINNQIN ISSTIEKDRS YYEMESLESK KITEEIPSYS SSISTEFNGI SGEED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688576.19e-35PREDICTED: transcription factor RAX1-like
SwissprotQ9FG683e-29RAX1_ARATH; Transcription factor RAX1
TrEMBLA0A068U4L92e-34A0A068U4L9_COFCA; Uncharacterized protein
STRINGGRMZM2G167829_P018e-31(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.11e-29myb domain protein 37